Class: Google::Apis::GenomicsV1::ImportVariantsRequest

Inherits:
Object
  • Object
show all
Includes:
Core::Hashable, Core::JsonObjectSupport
Defined in:
generated/google/apis/genomics_v1/classes.rb,
generated/google/apis/genomics_v1/representations.rb,
generated/google/apis/genomics_v1/representations.rb

Overview

The variant data import request.

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Core::JsonObjectSupport

#to_json

Methods included from Core::Hashable

process_value, #to_h

Constructor Details

#initialize(**args) ⇒ ImportVariantsRequest

Returns a new instance of ImportVariantsRequest



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# File 'generated/google/apis/genomics_v1/classes.rb', line 2813

def initialize(**args)
   update!(**args)
end

Instance Attribute Details

#format ⇒ String

The format of the variant data being imported. If unspecified, defaults to to VCF. Corresponds to the JSON property format

Returns:

  • (String) 


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# File 'generated/google/apis/genomics_v1/classes.rb', line 2791

def format
  @format
end

#info_merge_config ⇒ Hash<String,String>

A mapping between info field keys and the InfoMergeOperations to be performed on them. This is plumbed down to the MergeVariantRequests generated by the resulting import job. Corresponds to the JSON property infoMergeConfig

Returns:

  • (Hash<String,String>) 


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# File 'generated/google/apis/genomics_v1/classes.rb', line 2798

def info_merge_config
  @info_merge_config
end

#normalize_reference_names ⇒ Boolean Also known as: normalize_reference_names?

Convert reference names to the canonical representation. hg19 haploytypes (those reference names containing "_hap") are not modified in any way. All other reference names are modified according to the following rules: The reference name is capitalized. The "chr" prefix is dropped for all autosomes and sex chromsomes. For example "chr17" becomes "17" and "chrX" becomes "X". All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT". Corresponds to the JSON property normalizeReferenceNames

Returns:

  • (Boolean) 


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# File 'generated/google/apis/genomics_v1/classes.rb', line 2784

def normalize_reference_names
  @normalize_reference_names
end

#source_uris ⇒ Array<String>

A list of URIs referencing variant files in Google Cloud Storage. URIs can include wildcards as described here. Note that recursive wildcards ('**') are not supported. Corresponds to the JSON property sourceUris

Returns:

  • (Array<String>) 


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# File 'generated/google/apis/genomics_v1/classes.rb', line 2811

def source_uris
  @source_uris
end

#variant_set_id ⇒ String

Required. The variant set to which variant data should be imported. Corresponds to the JSON property variantSetId

Returns:

  • (String) 


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# File 'generated/google/apis/genomics_v1/classes.rb', line 2803

def variant_set_id
  @variant_set_id
end

Instance Method Details

#update!(**args) ⇒ Object

Update properties of this object



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# File 'generated/google/apis/genomics_v1/classes.rb', line 2818

def update!(**args)
  @normalize_reference_names = args[:normalize_reference_names] if args.key?(:normalize_reference_names)
  @format = args[:format] if args.key?(:format)
  @info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
  @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
  @source_uris = args[:source_uris] if args.key?(:source_uris)
end