Class: Google::Apis::GenomicsV1::Exon

Inherits:
Object
  • Object
show all
Includes:
Core::Hashable, Core::JsonObjectSupport
Defined in:
generated/google/apis/genomics_v1/classes.rb,
generated/google/apis/genomics_v1/representations.rb,
generated/google/apis/genomics_v1/representations.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Core::JsonObjectSupport

#to_json

Methods included from Core::Hashable

process_value, #to_h

Constructor Details

#initialize(**args) ⇒ Exon

Returns a new instance of Exon



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# File 'generated/google/apis/genomics_v1/classes.rb', line 712

def initialize(**args)
   update!(**args)
end

Instance Attribute Details

#end ⇒ Fixnum

The end position of the exon on this annotation's reference sequence, 0-based exclusive. Note that this is relative to the reference start, and not the containing annotation start. Corresponds to the JSON property end

Returns:

  • (Fixnum) 


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# File 'generated/google/apis/genomics_v1/classes.rb', line 694

def end
  @end
end

#frame ⇒ Fixnum

The frame of this exon. Contains a value of 0, 1, or 2, which indicates the offset of the first coding base of the exon within the reading frame of the coding DNA sequence, if any. This field is dependent on the strandedness of this annotation (see Annotation.reverse_strand). For forward stranded annotations, this offset is relative to the exon.start. For reverse strand annotations, this offset is relative to the exon.end - 1. Unset if this exon does not intersect the coding sequence. Upon creation of a transcript, the frame must be populated for all or none of the coding exons. Corresponds to the JSON property frame

Returns:

  • (Fixnum) 


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# File 'generated/google/apis/genomics_v1/classes.rb', line 710

def frame
  @frame
end

#start ⇒ Fixnum

The start position of the exon on this annotation's reference sequence, 0-based inclusive. Note that this is relative to the reference start, and not the containing annotation start. Corresponds to the JSON property start

Returns:

  • (Fixnum) 


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# File 'generated/google/apis/genomics_v1/classes.rb', line 687

def start
  @start
end

Instance Method Details

#update!(**args) ⇒ Object

Update properties of this object



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# File 'generated/google/apis/genomics_v1/classes.rb', line 717

def update!(**args)
  @start = args[:start] if args.key?(:start)
  @end = args[:end] if args.key?(:end)
  @frame = args[:frame] if args.key?(:frame)
end