Class: Google::Apis::GenomicsV1::ReadGroupSet
- Inherits:
-
Object
- Object
- Google::Apis::GenomicsV1::ReadGroupSet
- Includes:
- Core::Hashable, Core::JsonObjectSupport
- Defined in:
- generated/google/apis/genomics_v1/classes.rb,
generated/google/apis/genomics_v1/representations.rb,
generated/google/apis/genomics_v1/representations.rb
Overview
A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way.
- A read group set belongs to one dataset.
- A read group belongs to one read group set.
- A read belongs to one read group. For more genomics resource definitions, see Fundamentals of Google Genomics
Instance Attribute Summary collapse
-
#dataset_id ⇒ String
The dataset to which this read group set belongs.
-
#filename ⇒ String
The filename of the original source file for this read group set, if any.
-
#id ⇒ String
The server-generated read group set ID, unique for all read group sets.
-
#info ⇒ Hash<String,Array<Object>>
A map of additional read group set information.
-
#name ⇒ String
The read group set name.
-
#read_groups ⇒ Array<Google::Apis::GenomicsV1::ReadGroup>
The read groups in this set.
-
#reference_set_id ⇒ String
The reference set to which the reads in this read group set are aligned.
Instance Method Summary collapse
-
#initialize(**args) ⇒ ReadGroupSet
constructor
A new instance of ReadGroupSet.
-
#update!(**args) ⇒ Object
Update properties of this object.
Methods included from Core::JsonObjectSupport
Methods included from Core::Hashable
Constructor Details
#initialize(**args) ⇒ ReadGroupSet
Returns a new instance of ReadGroupSet
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2118 def initialize(**args) update!(**args) end |
Instance Attribute Details
#dataset_id ⇒ String
The dataset to which this read group set belongs.
Corresponds to the JSON property datasetId
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2084 def dataset_id @dataset_id end |
#filename ⇒ String
The filename of the original source file for this read group set, if any.
Corresponds to the JSON property filename
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2089 def filename @filename end |
#id ⇒ String
The server-generated read group set ID, unique for all read group sets.
Corresponds to the JSON property id
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2094 def id @id end |
#info ⇒ Hash<String,Array<Object>>
A map of additional read group set information.
Corresponds to the JSON property info
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2099 def info @info end |
#name ⇒ String
The read group set name. By default this will be initialized to the sample
name of the sequenced data contained in this set.
Corresponds to the JSON property name
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2105 def name @name end |
#read_groups ⇒ Array<Google::Apis::GenomicsV1::ReadGroup>
The read groups in this set. There are typically 1-10 read groups in a read
group set.
Corresponds to the JSON property readGroups
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2111 def read_groups @read_groups end |
#reference_set_id ⇒ String
The reference set to which the reads in this read group set are aligned.
Corresponds to the JSON property referenceSetId
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2116 def reference_set_id @reference_set_id end |
Instance Method Details
#update!(**args) ⇒ Object
Update properties of this object
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2123 def update!(**args) @dataset_id = args[:dataset_id] if args.key?(:dataset_id) @filename = args[:filename] if args.key?(:filename) @id = args[:id] if args.key?(:id) @info = args[:info] if args.key?(:info) @name = args[:name] if args.key?(:name) @read_groups = args[:read_groups] if args.key?(:read_groups) @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id) end |