Class: Google::Apis::GenomicsV1::ReadGroupSet

Inherits:
Object
  • Object
show all
Includes:
Core::Hashable, Core::JsonObjectSupport
Defined in:
generated/google/apis/genomics_v1/classes.rb,
generated/google/apis/genomics_v1/representations.rb,
generated/google/apis/genomics_v1/representations.rb

Overview

A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way.

  • A read group set belongs to one dataset.
  • A read group belongs to one read group set.
  • A read belongs to one read group.

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Core::JsonObjectSupport

#to_json

Methods included from Core::Hashable

process_value, #to_h

Constructor Details

#initialize(**args) ⇒ ReadGroupSet

Returns a new instance of ReadGroupSet



2132
2133
2134
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2132

def initialize(**args)
   update!(**args)
end

Instance Attribute Details

#dataset_id ⇒ String

The dataset to which this read group set belongs. Corresponds to the JSON property datasetId

Returns:

  • (String) 


2098
2099
2100
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2098

def dataset_id
  @dataset_id
end

#filename ⇒ String

The filename of the original source file for this read group set, if any. Corresponds to the JSON property filename

Returns:

  • (String) 


2103
2104
2105
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2103

def filename
  @filename
end

#id ⇒ String

The server-generated read group set ID, unique for all read group sets. Corresponds to the JSON property id

Returns:

  • (String) 


2108
2109
2110
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2108

def id
  @id
end

#info ⇒ Hash<String,Array<Object>>

A map of additional read group set information. Corresponds to the JSON property info

Returns:

  • (Hash<String,Array<Object>>) 


2113
2114
2115
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2113

def info
  @info
end

#name ⇒ String

The read group set name. By default this will be initialized to the sample name of the sequenced data contained in this set. Corresponds to the JSON property name

Returns:

  • (String) 


2119
2120
2121
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2119

def name
  @name
end

#read_groups ⇒ Array<Google::Apis::GenomicsV1::ReadGroup>

The read groups in this set. There are typically 1-10 read groups in a read group set. Corresponds to the JSON property readGroups

Returns:



2125
2126
2127
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2125

def read_groups
  @read_groups
end

#reference_set_id ⇒ String

The reference set to which the reads in this read group set are aligned. Corresponds to the JSON property referenceSetId

Returns:

  • (String) 


2130
2131
2132
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2130

def reference_set_id
  @reference_set_id
end

Instance Method Details

#update!(**args) ⇒ Object

Update properties of this object



2137
2138
2139
2140
2141
2142
2143
2144
2145
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2137

def update!(**args)
  @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
  @filename = args[:filename] if args.key?(:filename)
  @id = args[:id] if args.key?(:id)
  @info = args[:info] if args.key?(:info)
  @name = args[:name] if args.key?(:name)
  @read_groups = args[:read_groups] if args.key?(:read_groups)
  @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
end