Class: Google::Apis::GenomicsV1::SearchReadsRequest
- Inherits:
-
Object
- Object
- Google::Apis::GenomicsV1::SearchReadsRequest
- Includes:
- Core::Hashable, Core::JsonObjectSupport
- Defined in:
- generated/google/apis/genomics_v1/classes.rb,
generated/google/apis/genomics_v1/representations.rb,
generated/google/apis/genomics_v1/representations.rb
Overview
The read search request.
Instance Attribute Summary collapse
-
#end ⇒ Fixnum
The end position of the range on the reference, 0-based exclusive.
-
#page_size ⇒ Fixnum
The maximum number of results to return in a single page.
-
#page_token ⇒ String
The continuation token, which is used to page through large result sets.
-
#read_group_ids ⇒ Array<String>
The IDs of the read groups within which to search for reads.
-
#read_group_set_ids ⇒ Array<String>
The IDs of the read groups sets within which to search for reads.
-
#reference_name ⇒ String
The reference sequence name, for example
chr1
,1
, orchrX
. -
#start ⇒ Fixnum
The start position of the range on the reference, 0-based inclusive.
Instance Method Summary collapse
-
#initialize(**args) ⇒ SearchReadsRequest
constructor
A new instance of SearchReadsRequest.
-
#update!(**args) ⇒ Object
Update properties of this object.
Methods included from Core::JsonObjectSupport
Methods included from Core::Hashable
Constructor Details
#initialize(**args) ⇒ SearchReadsRequest
Returns a new instance of SearchReadsRequest
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2701 def initialize(**args) update!(**args) end |
Instance Attribute Details
#end ⇒ Fixnum
The end position of the range on the reference, 0-based exclusive. If
specified, referenceName
must also be specified.
Corresponds to the JSON property end
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2658 def end @end end |
#page_size ⇒ Fixnum
The maximum number of results to return in a single page. If unspecified,
defaults to 256. The maximum value is 2048.
Corresponds to the JSON property pageSize
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2664 def page_size @page_size end |
#page_token ⇒ String
The continuation token, which is used to page through large result sets.
To get the next page of results, set this parameter to the value of
nextPageToken
from the previous response.
Corresponds to the JSON property pageToken
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2671 def page_token @page_token end |
#read_group_ids ⇒ Array<String>
The IDs of the read groups within which to search for reads. All specified
read groups must belong to the same read group sets. Must specify one of
readGroupSetIds
or readGroupIds
.
Corresponds to the JSON property readGroupIds
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2678 def read_group_ids @read_group_ids end |
#read_group_set_ids ⇒ Array<String>
The IDs of the read groups sets within which to search for reads. All
specified read group sets must be aligned against a common set of reference
sequences; this defines the genomic coordinates for the query. Must specify
one of readGroupSetIds
or readGroupIds
.
Corresponds to the JSON property readGroupSetIds
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2686 def read_group_set_ids @read_group_set_ids end |
#reference_name ⇒ String
The reference sequence name, for example chr1
, 1
, or chrX
. If set to
*
, only unmapped reads are returned. If unspecified, all reads (mapped
and unmapped) are returned.
Corresponds to the JSON property referenceName
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2693 def reference_name @reference_name end |
#start ⇒ Fixnum
The start position of the range on the reference, 0-based inclusive. If
specified, referenceName
must also be specified.
Corresponds to the JSON property start
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2699 def start @start end |
Instance Method Details
#update!(**args) ⇒ Object
Update properties of this object
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# File 'generated/google/apis/genomics_v1/classes.rb', line 2706 def update!(**args) @end = args[:end] if args.key?(:end) @page_size = args[:page_size] if args.key?(:page_size) @page_token = args[:page_token] if args.key?(:page_token) @read_group_ids = args[:read_group_ids] if args.key?(:read_group_ids) @read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids) @reference_name = args[:reference_name] if args.key?(:reference_name) @start = args[:start] if args.key?(:start) end |