Class: Google::Apis::GenomicsV1::VariantSet
- Inherits:
-
Object
- Object
- Google::Apis::GenomicsV1::VariantSet
- Includes:
- Core::Hashable, Core::JsonObjectSupport
- Defined in:
- generated/google/apis/genomics_v1/classes.rb,
generated/google/apis/genomics_v1/representations.rb,
generated/google/apis/genomics_v1/representations.rb
Overview
A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset.
Instance Attribute Summary collapse
-
#dataset_id ⇒ String
The dataset to which this variant set belongs.
-
#description ⇒ String
A textual description of this variant set.
-
#id ⇒ String
The server-generated variant set ID, unique across all variant sets.
-
#metadata ⇒ Array<Google::Apis::GenomicsV1::VariantSetMetadata>
The metadata associated with this variant set.
-
#name ⇒ String
User-specified, mutable name.
-
#reference_bounds ⇒ Array<Google::Apis::GenomicsV1::ReferenceBound>
A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
-
#reference_set_id ⇒ String
The reference set to which the variant set is mapped.
Instance Method Summary collapse
-
#initialize(**args) ⇒ VariantSet
constructor
A new instance of VariantSet.
-
#update!(**args) ⇒ Object
Update properties of this object.
Methods included from Core::JsonObjectSupport
Methods included from Core::Hashable
Constructor Details
#initialize(**args) ⇒ VariantSet
Returns a new instance of VariantSet
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# File 'generated/google/apis/genomics_v1/classes.rb', line 3632 def initialize(**args) update!(**args) end |
Instance Attribute Details
#dataset_id ⇒ String
The dataset to which this variant set belongs.
Corresponds to the JSON property datasetId
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# File 'generated/google/apis/genomics_v1/classes.rb', line 3591 def dataset_id @dataset_id end |
#description ⇒ String
A textual description of this variant set.
Corresponds to the JSON property description
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# File 'generated/google/apis/genomics_v1/classes.rb', line 3596 def description @description end |
#id ⇒ String
The server-generated variant set ID, unique across all variant sets.
Corresponds to the JSON property id
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# File 'generated/google/apis/genomics_v1/classes.rb', line 3601 def id @id end |
#metadata ⇒ Array<Google::Apis::GenomicsV1::VariantSetMetadata>
The metadata associated with this variant set.
Corresponds to the JSON property metadata
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# File 'generated/google/apis/genomics_v1/classes.rb', line 3606 def @metadata end |
#name ⇒ String
User-specified, mutable name.
Corresponds to the JSON property name
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# File 'generated/google/apis/genomics_v1/classes.rb', line 3611 def name @name end |
#reference_bounds ⇒ Array<Google::Apis::GenomicsV1::ReferenceBound>
A list of all references used by the variants in a variant set
with associated coordinate upper bounds for each one.
Corresponds to the JSON property referenceBounds
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# File 'generated/google/apis/genomics_v1/classes.rb', line 3617 def reference_bounds @reference_bounds end |
#reference_set_id ⇒ String
The reference set to which the variant set is mapped. The reference set
describes the alignment provenance of the variant set, while the
referenceBounds
describe the shape of the actual variant data. The
reference set's reference names are a superset of those found in the
referenceBounds
.
For example, given a variant set that is mapped to the GRCh38 reference set
and contains a single variant on reference 'X', referenceBounds
would
contain only an entry for 'X', while the associated reference set
enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
Corresponds to the JSON property referenceSetId
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# File 'generated/google/apis/genomics_v1/classes.rb', line 3630 def reference_set_id @reference_set_id end |
Instance Method Details
#update!(**args) ⇒ Object
Update properties of this object
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# File 'generated/google/apis/genomics_v1/classes.rb', line 3637 def update!(**args) @dataset_id = args[:dataset_id] if args.key?(:dataset_id) @description = args[:description] if args.key?(:description) @id = args[:id] if args.key?(:id) @metadata = args[:metadata] if args.key?(:metadata) @name = args[:name] if args.key?(:name) @reference_bounds = args[:reference_bounds] if args.key?(:reference_bounds) @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id) end |