Class: Google::Apis::GenomicsV1::ReadGroupSet

Inherits:
Object
  • Object
show all
Includes:
Core::Hashable, Core::JsonObjectSupport
Defined in:
generated/google/apis/genomics_v1/classes.rb,
generated/google/apis/genomics_v1/representations.rb,
generated/google/apis/genomics_v1/representations.rb

Overview

A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way.

  • A read group set belongs to one dataset.
  • A read group belongs to one read group set.
  • A read belongs to one read group.

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Core::JsonObjectSupport

#to_json

Methods included from Core::Hashable

process_value, #to_h

Constructor Details

#initialize(**args) ⇒ ReadGroupSet

Returns a new instance of ReadGroupSet



2209
2210
2211
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2209

def initialize(**args)
   update!(**args)
end

Instance Attribute Details

#dataset_id ⇒ String

The dataset to which this read group set belongs. Corresponds to the JSON property datasetId

Returns:

  • (String) 


2175
2176
2177
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2175

def dataset_id
  @dataset_id
end

#filename ⇒ String

The filename of the original source file for this read group set, if any. Corresponds to the JSON property filename

Returns:

  • (String) 


2180
2181
2182
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2180

def filename
  @filename
end

#id ⇒ String

The server-generated read group set ID, unique for all read group sets. Corresponds to the JSON property id

Returns:

  • (String) 


2185
2186
2187
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2185

def id
  @id
end

#info ⇒ Hash<String,Array<Object>>

A map of additional read group set information. Corresponds to the JSON property info

Returns:

  • (Hash<String,Array<Object>>) 


2190
2191
2192
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2190

def info
  @info
end

#name ⇒ String

The read group set name. By default this will be initialized to the sample name of the sequenced data contained in this set. Corresponds to the JSON property name

Returns:

  • (String) 


2196
2197
2198
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2196

def name
  @name
end

#read_groups ⇒ Array<Google::Apis::GenomicsV1::ReadGroup>

The read groups in this set. There are typically 1-10 read groups in a read group set. Corresponds to the JSON property readGroups

Returns:



2202
2203
2204
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2202

def read_groups
  @read_groups
end

#reference_set_id ⇒ String

The reference set to which the reads in this read group set are aligned. Corresponds to the JSON property referenceSetId

Returns:

  • (String) 


2207
2208
2209
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2207

def reference_set_id
  @reference_set_id
end

Instance Method Details

#update!(**args) ⇒ Object

Update properties of this object



2214
2215
2216
2217
2218
2219
2220
2221
2222
 
# File 'generated/google/apis/genomics_v1/classes.rb', line 2214

def update!(**args)
  @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
  @filename = args[:filename] if args.key?(:filename)
  @id = args[:id] if args.key?(:id)
  @info = args[:info] if args.key?(:info)
  @name = args[:name] if args.key?(:name)
  @read_groups = args[:read_groups] if args.key?(:read_groups)
  @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
end