Class: Google::Apis::GenomicsV1::GenomicsService

Inherits:
Core::BaseService show all
Defined in:
generated/google/apis/genomics_v1/service.rb

Overview

Genomics API

Uploads, processes, queries, and searches Genomics data in the cloud.

Examples:

require 'google/apis/genomics_v1'

Genomics = Google::Apis::GenomicsV1 # Alias the module
service = Genomics::GenomicsService.new

See Also:

Instance Attribute Summary collapse

Attributes inherited from Core::BaseService

#authorization, #base_path, #batch_path, #client, #client_options, #request_options, #root_url, #upload_path

Instance Method Summary collapse

Methods inherited from Core::BaseService

#batch, #batch_upload, #fetch_all, #http

Methods included from Core::Logging

#logger

Constructor Details

#initialize ⇒ GenomicsService

Returns a new instance of GenomicsService.



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# File 'generated/google/apis/genomics_v1/service.rb', line 45

def initialize
  super('https://genomics.googleapis.com/', '')
  @batch_path = 'batch'
end

Instance Attribute Details

#key ⇒ String

Returns API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.

Returns:

  • (String) —

    API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.



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# File 'generated/google/apis/genomics_v1/service.rb', line 38

def key
  @key
end

#quota_user ⇒ String

Returns Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.

Returns:

  • (String) —

    Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.



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# File 'generated/google/apis/genomics_v1/service.rb', line 43

def quota_user
  @quota_user
end

Instance Method Details

#cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty

Starts asynchronous cancellation on a long-running operation. The server makes a best effort to cancel the operation, but success is not guaranteed. Clients may use Operations.GetOperation or Operations.ListOperations to check whether the cancellation succeeded or the operation completed despite cancellation. Authorization requires the following Google IAM permission:

  • genomics.operations.cancel

Parameters:

  • name (String) —

    The name of the operation resource to be cancelled.

  • cancel_operation_request_object (Google::Apis::GenomicsV1::CancelOperationRequest) (defaults to: nil)
  • fields (String) (defaults to: nil) —

    Selector specifying which fields to include in a partial response.

  • quota_user (String) (defaults to: nil) —

    Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.

  • options (Google::Apis::RequestOptions) (defaults to: nil) —

    Request-specific options

Yields:

  • (result, err) —

    Result & error if block supplied

Yield Parameters:

Returns:

Raises:



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# File 'generated/google/apis/genomics_v1/service.rb', line 79

def cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
  command = make_simple_command(:post, 'v1/{+name}:cancel', options)
  command.request_representation = Google::Apis::GenomicsV1::CancelOperationRequest::Representation
  command.request_object = cancel_operation_request_object
  command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
  command.response_class = Google::Apis::GenomicsV1::Empty
  command.params['name'] = name unless name.nil?
  command.query['fields'] = fields unless fields.nil?
  command.query['quotaUser'] = quota_user unless quota_user.nil?
  execute_or_queue_command(command, &block)
end

#get_operation(name, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation

Gets the latest state of a long-running operation. Clients can use this method to poll the operation result at intervals as recommended by the API service. Authorization requires the following Google IAM permission:

  • genomics.operations.get

Parameters:

  • name (String) —

    The name of the operation resource.

  • fields (String) (defaults to: nil) —

    Selector specifying which fields to include in a partial response.

  • quota_user (String) (defaults to: nil) —

    Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.

  • options (Google::Apis::RequestOptions) (defaults to: nil) —

    Request-specific options

Yields:

  • (result, err) —

    Result & error if block supplied

Yield Parameters:

Returns:

Raises:



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# File 'generated/google/apis/genomics_v1/service.rb', line 116

def get_operation(name, fields: nil, quota_user: nil, options: nil, &block)
  command = make_simple_command(:get, 'v1/{+name}', options)
  command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
  command.response_class = Google::Apis::GenomicsV1::Operation
  command.params['name'] = name unless name.nil?
  command.query['fields'] = fields unless fields.nil?
  command.query['quotaUser'] = quota_user unless quota_user.nil?
  execute_or_queue_command(command, &block)
end

#list_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ListOperationsResponse

Lists operations that match the specified filter in the request. Authorization requires the following Google IAM permission:

  • genomics.operations.list

Parameters:

  • name (String) —

    The name of the operation's parent resource.

  • filter (String) (defaults to: nil) —

    A string for filtering Operations. In v2alpha1, the following filter fields are supported:

    • createTime: The time this job was created
    • events: The set of event (names) that have occurred while running the pipeline. The : operator can be used to determine if a particular event has occurred.
    • error: If the pipeline is running, this value is NULL. Once the pipeline finishes, the value is the standard Google error code.
    • labels.key or labels."key with space" where key is a label key.
    • done: If the pipeline is running, this value is false. Once the pipeline finishes, the value is true. In v1 and v1alpha2, the following filter fields are supported:
    • projectId: Required. Corresponds to OperationMetadata.projectId.
    • createTime: The time this job was created, in seconds from the epoch. Can use >= and/or <= operators.
    • status: Can be RUNNING, SUCCESS, FAILURE, or CANCELED. Only one status may be specified.
    • labels.key where key is a label key. Examples:
    • projectId = my-project AND createTime >= 1432140000
    • projectId = my-project AND createTime >= 1432140000 AND createTime <= 1432150000 AND status = RUNNING
    • projectId = my-project AND labels.color = *
    • projectId = my-project AND labels.color = red
  • page_size (Fixnum) (defaults to: nil) —

    The maximum number of results to return. The maximum value is 256.

  • page_token (String) (defaults to: nil) —

    The standard list page token.

  • fields (String) (defaults to: nil) —

    Selector specifying which fields to include in a partial response.

  • quota_user (String) (defaults to: nil) —

    Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.

  • options (Google::Apis::RequestOptions) (defaults to: nil) —

    Request-specific options

Yields:

  • (result, err) —

    Result & error if block supplied

Yield Parameters:

Returns:

Raises:



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# File 'generated/google/apis/genomics_v1/service.rb', line 180

def list_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block)
  command = make_simple_command(:get, 'v1/{+name}', options)
  command.response_representation = Google::Apis::GenomicsV1::ListOperationsResponse::Representation
  command.response_class = Google::Apis::GenomicsV1::ListOperationsResponse
  command.params['name'] = name unless name.nil?
  command.query['filter'] = filter unless filter.nil?
  command.query['pageSize'] = page_size unless page_size.nil?
  command.query['pageToken'] = page_token unless page_token.nil?
  command.query['fields'] = fields unless fields.nil?
  command.query['quotaUser'] = quota_user unless quota_user.nil?
  execute_or_queue_command(command, &block)
end